IMR Press / FBL / Volume 12 / Issue 13 / DOI: 10.2741/2552

Frontiers in Bioscience-Landmark (FBL) is published by IMR Press from Volume 26 Issue 5 (2021). Previous articles were published by another publisher on a subscription basis, and they are hosted by IMR Press on imrpress.com as a courtesy and upon agreement with Frontiers in Bioscience.

Article
Sequence-specific analysis of oligodeoxynucleotides by precipitate-amplified surface plasmon resonance measurements
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1 College of Chemistry and Chemical Engineering, Central South University, Changsha, Hunan, 410083, P. R. China
2 Department of Chemistry and Biochemistry, California State University, Los Angeles, Los Angeles, CA, 90032, USA
Front. Biosci. (Landmark Ed) 2007, 12(13), 5117–5123; https://doi.org/10.2741/2552
Published: 1 September 2007
Abstract

A flow injection SPR spectrometer is used to detect DNA hybridization via amplification by an enzyme-catalyzed precipitation reaction. Hybridization of an oligodeoxynucleotide (ODN) target with a surface-confined ODN probe, followed by hybridization between the overhang on the resultant duplex and a biotin-tagged ODN, yields a "sandwich" complex (a three-component double-stranded). A streptavidin-horseradish peroxidase conjugate (SA-HRP) can be attached to the sandwich complex-covered surface via the biotin/streptavidin complexation. In the presence of H2O2, the HRP catalyzes oxidation of 4-chloro-1-naphthol (CN) to form a precipitate on the sensor surface. The precipitated film dramatically changes the refractive index at the metal/dielectric interface and significantly lowers the detection level. The method is shown to be reproducible, to possess high ODN sequence specificity and a high sensitivity allowing detection of ODN target concentration as low as 10 fM.

Keywords
SPR
FI
DNA hybridization
Enzymecatalyzed precipitation
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