IMR Press / FBL / Volume 13 / Issue 3 / DOI: 10.2741/2725

Frontiers in Bioscience-Landmark (FBL) is published by IMR Press from Volume 26 Issue 5 (2021). Previous articles were published by another publisher on a subscription basis, and they are hosted by IMR Press on imrpress.com as a courtesy and upon agreement with Frontiers in Bioscience.

Article

Homologous housekeeping proteins in Nocardia – the NoDaMS proteomic database

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1 Integrated Functional Genomics, Interdisciplinary Center for Clinical Research, University of Muenster, Germany
2 Department of Microbiology, College of Medicine, King Khalid University, Abha, Kingdom of Saudi Arabia
3 General Directorate of Laboratories and Medical Research, Federal Ministry of Health, Sudan
4 General Directorate of the Institute of Endemic Diseases, University of Khartoum, Sudan
5 College of Medical Laboratory Sciences, Sudan University of Science and Technology, Khartoum, Sudan
Front. Biosci. (Landmark Ed) 2008, 13(3), 842–855; https://doi.org/10.2741/2725
Published: 1 January 2008
Abstract

Nocardiosis is on the rise but hard to diagnose and the application of advanced subtyping technologies is called for. While the genomic sequence for the most virulent strain, Nocardia farcinica is available, proteome data are essentially non-existent. Nevertheless, they are necessary for functional studies on virulence and disease prevention. Here, comparative gel electrophoresis (PAGE)-based analyses of the five Nocardia strains SD1828, N. africana SD910, SD 925, N. sp. 1086, and N. asteroides N317 are discussed. The two-dimensional gel images of all strains are similar and dominated by housekeeping proteins such as chaperones and metabolic enzymes. The sequences of many proteins are highly homologous among strains and in some cases Mycobacterium sequences are closer matches to the unknown than those of N. farcinica. All mass spectrometry data are made available in the NoDaMS database at URL http://ifg.uni-muenster.de/ (Proteomics-Projects-NoDaMS) for re-evaluation with fresh sequencing information. Assignments, homology analyses, and peptide matches are presented. This data review comprises the first comprehensive summary of proteomic data of Nocardia.

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