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[1]L. C. Giudice and L. C. Kao: Endometriosis. Lancet, 364(9447), 1789-99 (2004)
[2]J. A. Sampson: Peritoneal endometriosis due to the menstrual dissemination of endometrial tissue into the peritoneal cavity. Am. J. Obstet. Gynecol., 14, 422-469 (1927)
[3]R. O. Burney and L. C. Giudice: Pathogenesis and pathophysiology of endometriosis. Fertil Steril, 98(3), 511-9 (2012)
[4]S. Kennedy, A. Bergqvist, C. Chapron, T. D’Hooghe, G. Dunselman, R. Greb, L. Hummelshoj, A. Prentice, E. Saridogan, E. S. I. G. f. Endometriosis and G. Endometrium Guideline Development: ESHRE guideline for the diagnosis and treatment of endometriosis. Hum Reprod, 20(10), 2698-704(2005)
[5]A. Fassbender, A. Vodolazkaia, P. Saunders, D. Lebovic, E. Waelkens, B. De Moor and T. D’Hooghe: Biomarkers of endometriosis. Fertil Steril, 99(4), 1135-45 (2013)
[6]K. E. May, S. A. Conduit-Hulbert, J. Villar, S. Kirtley, S. H. Kennedy and C. M. Becker: Peripheral biomarkers of endometriosis: a systematic review. Hum Reprod Update, 16(6), 651-74 (2010)
[7]A. Fassbender, R. O. Burney, D. F. O, T. D’Hooghe and L. Giudice: Update on Biomarkers for the Detection of Endometriosis. Biomed Res Int, 2015, 130854 (2015)
[8]X. Robin, N. Turck, A. Hainard, F. Lisacek, J. C. Sanchez and M. Muller: Bioinformatics for protein biomarker panel classification: what is needed to bring biomarker panels into in vitro diagnostics? Expert Rev Proteomics, 6(6), 675-89 (2009)
[9]B. B. Haab: Methods and applications of antibody microarrays in cancer research. Proteomics, 3(11), 2116-22 (2003)
[10]B. Seeber, M. D. Sammel, X. Fan, G. L. Gerton, A. Shaunik, J. Chittams and K. T. Barnhart: Panel of markers can accurately predict endometriosis in a subset of patients. Fertil Steril, 89(5), 1073-81 (2008)
[11]A. Vodolazkaia, Y. El-Aalamat, D. Popovic, A. Mihalyi, X. Bossuyt, C. M. Kyama, A. Fassbender, A. Bokor, D. Schols, D. Huskens, C. Meuleman, K. Peeraer, C. Tomassetti, O. Gevaert, E. Waelkens, A. Kasran, B. De Moor and T. M. D’Hooghe: Evaluation of a panel of 28 biomarkers for the non-invasive diagnosis of endometriosis. Hum Reprod, 27(9), 2698-711 (2012)
[12]T. L. Rizner: Noninvasive biomarkers of endometriosis: myth or reality? Expert Rev Mol Diagn, 14(3), 365-85 (2014)
[13]K. E. May, J. Villar, S. Kirtley, S. H. Kennedy and C. M. Becker: Endometrial alterations in endometriosis: a systematic review of putative biomarkers. Hum Reprod Update, 17(5), 637-53 (2011)
[14]C. Mohan and S. Assassi: Biomarkers in rheumatic diseases: how can they facilitate diagnosis and assessment of disease activity? BMJ, 351, h5079 (2015)
[15]J. R. Curtis, A. H. van der Helm-van Mil, R. Knevel, T. W. Huizinga, D. J. Haney, Y. Shen, S. Ramanujan, G. Cavet, M. Centola, L. K. Hesterberg, D. Chernoff, K. Ford, N. A. Shadick, M. Hamburger, R. Fleischmann, E. Keystone and M. E. Weinblatt: Validation of a novel multibiomarker test to assess rheumatoid arthritis disease activity. Arthritis Care Res (Hoboken), 64(12), 1794-803 (2012)
[16]M. F. Templin, D. Stoll, J. M. Schwenk, O. Potz, S. Kramer and T. O. Joos: Protein microarrays: promising tools for proteomic research. Proteomics, 3(11), 2155-66 (2003)
[17]S. X. Leng, J. E. McElhaney, J. D. Walston, D. Xie, N. S. Fedarko and G. A. Kuchel: ELISA and multiplex technologies for cytokine measurement in inflammation and aging research. J Gerontol A Biol Sci Med Sci, 63(8), 879-84 (2008)
[18]R. P. Huang, B. Burkholder, V. S. Jones, W. D. Jiang, Y. Q. Mao, Q. L. Chen and Z. Shi: Cytokine Antibody Arrays in Biomarker Discovery and Validation. Current Proteomics, 9(1), 55-70 (2012)
[19]S. F. Kingsmore: Multiplexed protein measurement: technologies and applications of protein and antibody arrays. Nat Rev Drug Discov, 5(4), 310-20 (2006)
[20]R. N. Fichorova, N. Richardson-Harman, M. Alfano, L. Belec, C. Carbonneil, S. Chen, L. Cosentino, K. Curtis, C. S. Dezzutti, B. Donoval, G. F. Doncel, M. Donaghay, J. C. Grivel, E. Guzman, M. Hayes, B. Herold, S. Hillier, C. Lackman-Smith, A. Landay, L. Margolis, K. H. Mayer, J. M. Pasicznyk, M. Pallansch-Cokonis, G. Poli, P. Reichelderfer, P. Roberts, I. Rodriguez, H. Saidi, R. R. Sassi, R. Shattock and J. E. Cummins, Jr.: Biological and technical variables affecting immunoassay recovery of cytokines from human serum and simulated vaginal fluid: a multicenter study. Anal Chem, 80(12), 4741-51(2008)
[21]K. Kohler and H. Seitz: Validation processes of protein biomarkers in serum--a cross platform comparison. Sensors (Basel), 12(9), 12710-28 (2012)
[22]M. F. Elshal and J. P. McCoy: Multiplex bead array assays: performance evaluation and comparison of sensitivity to ELISA. Methods, 38(4), 317-23 (2006)
[23]R. Huang, W. Jiang, J. Yang, Y. Q. Mao, Y. Zhang, W. Yang, D. Yang, B. Burkholder, R. F. Huang and R. P. Huang: A biotin label-based antibody array for high-content profiling of protein expression. Cancer Genomics Proteomics, 7(3), 129-41 (2010)
[24]M. E. Arellano-Garcia, S. Hu, J. Wang, B. Henson, H. Zhou, D. Chia and D. T. Wong: Multiplexed immunobead-based assay for detection of oral cancer protein biomarkers in saliva. Oral Dis, 14(8), 705-12 (2008)
[25]T. Knickerbocker, J. R. Chen, R. Thadhani and G. MacBeath: An integrated approach to prognosis using protein microarrays and nonparametric methods. Mol Syst Biol, 3, 123 (2007)
[26]P. J. Tighe, R. R. Ryder, I. Todd and L. C. Fairclough: ELISA in the multiplex era: potentials and pitfalls. Proteomics Clin Appl, 9(3-4), 406-22 (2015)
[27]P. Laudanski, J. Szamatowicz and M. Oniszczuk: Profiling of peritoneal fluid of women with endometriosis by chemokine protein array. Adv Med Sci 51, 148-52 (2006)
[28]T. Yiğitbaşı: Multiplex Immunoassay and Bead Based Multiplex. In: Trends in Immunolabelled and Related Techniques. Ed E. Abuelzein. (2012)
[29]L. de Koning, C. Liptak, A. Shkreta, G. Bradwin, F. B. Hu, A. D. Pradhan, N. Rifai and M. D. Kellogg: A multiplex immunoassay gives different results than singleplex immunoassays which may bias epidemiologic associations. Clin Biochem, 45(10-11), 848-51 (2012)
[30]M. Liew, M. C. Groll, J. E. Thompson, S. L. Call, J. E. Moser, J. D. Hoopes, K. Voelkerding, C. Wittwer and R. S. Spendlove: Validating a custom multiplex ELISA against individual commercial immunoassays using clinical samples. Biotechniques, 42(3), 327-8, 330-3 (2007)
[31]Q. Fu, J. Zhu and J. E. Van Eyk: Comparison of multiplex immunoassay platforms. Clin Chem, 56(2), 314-8 (2010)
[32]P. Díez, N. Dasilva, M. González-González, S. Matarraz, J. Casado-Vela, A. Orfao and M. Fuentes: Data analysis strategies for protein microarrays. Microarrays, 1(2), 64-83 (2012)
[33]H. D. Soares, Y. Chen, M. Sabbagh, A. Roher, E. Schrijvers and M. Breteler: Identifying early markers of Alzheimer’s disease using quantitative multiplex proteomic immunoassay panels. Ann N Y Acad Sci, 1180, 56-67(2009)
[34]A. Tarnok, J. Hambsch, R. Chen and R. Varro: Cytometric bead array to measure six cytokines in twenty-five microliters of serum. Clin Chem, 49(6 Pt 1), 1000-2 (2003)
[35]Y. W. Kim, S. M. Bae, I. W. Kim, H. B. Liu, H. J. Bang, P. K. Chaturvedi, G. Battogtokh, H. Lim and W. S. Ahn: Multiplexed bead-based immunoassay of four serum biomarkers for diagnosis of ovarian cancer. Oncol Rep, 28(2), 585-91 (2012)
[36]N. A. Bersinger, H. Dechaud, B. McKinnon and M. D. Mueller: Analysis of cytokines in the peritoneal fluid of endometriosis patients as a function of the menstrual cycle stage using the Bio-Plex(R) platform. Arch Physiol Biochem, 118(4), 210-8 (2012)
[37]J. Mier-Cabrera, L. Jimenez-Zamudio, E. Garcia-Latorre, O. Cruz-Orozco and C. Hernandez-Guerrero: Quantitative and qualitative peritoneal immune profiles, T-cell apoptosis and oxidative stress-associated characteristics in women with minimal and mild endometriosis. BJOG, 118(1), 6-16 (2011)
[38]M. T. Beste, N. Pfaffle-Doyle, E. A. Prentice, S. N. Morris, D. A. Lauffenburger, K. B. Isaacson and L. G. Griffith: Molecular network analysis of endometriosis reveals a role for c-Jun-regulated macrophage activation. Sci Transl Med, 6(222), 222ra16 (2014)
[39]S. Podgaec, M. S. Abrao, J. A. Dias, Jr., L. V. Rizzo, R. M. de Oliveira and E. C. Baracat: Endometriosis: an inflammatory disease with a Th2 immune response component. Hum Reprod, 22(5), 1373-9 (2007)
[40]D. Wickiewicz, A. Chrobak, G. B. Gmyrek, A. Halbersztadt, M. S. Gabrys, M. Goluda and A. Chelmonska-Soyta: Diagnostic accuracy of interleukin-6 levels in peritoneal fluid for detection of endometriosis. Arch Gynecol Obstet, 288(4), 805-14 (2013)
[41]D. Othman Eel, D. Hornung, H. T. Salem, E. A. Khalifa, T. H. El-Metwally and A. Al-Hendy: Serum cytokines as biomarkers for nonsurgical prediction of endometriosis. Eur J Obstet Gynecol Reprod Biol, 137(2), 240-6 (2008)
[42]G. M. Borrelli, A. M. Kaufmann, M. S. Abrao and S. Mechsner: Addition of MCP-1 and MIP-3beta to the IL-8 appraisal in peritoneal fluid enhances the probability of identifying women with endometriosis. J Reprod Immunol, 109, 66-73 (2015)
[43]V. Kocbek, K. Vouk, N. A. Bersinger, M. D. Mueller and T. Lanisnik Rizner: Panels of cytokines and other secretory proteins as potential biomarkers of ovarian endometriosis. J Mol Diagn, 17(3), 325-34 (2015)
[44]A. M. Malutan, T. Drugan, N. Costin, R. Ciortea, C. Bucuri, M. P. Rada and D. Mihu: Pro-inflammatory cytokines for evaluation of inflammatory status in endometriosis. Cent Eur J Immunol, 40(1), 96-102 (2015)
[45]I. H. Khan, V. V. Krishnan, M. Ziman, K. Janatpour, T. Wun, P. A. Luciw and J. Tuscano: A comparison of multiplex suspension array large-panel kits for profiling cytokines and chemokines in rheumatoid arthritis patients. Cytometry B Clin Cytom, 76(3), 159-68 (2009)
[46]S. P. Gygi and R. Aebersold: Mass spectrometry and proteomics. Curr Opin Chem Biol, 4(5), 489-94 (2000)
[47]T. Liu, R. Xue, L. Dong, H. Wu, D. Zhang and X. Shen: Rapid determination of serological cytokine biomarkers for hepatitis B virus-related hepatocellular carcinoma using antibody microarrays. Acta Biochim Biophys Sin (Shanghai), 43(1), 45-51 (2011)
[48]W. Jiang, Y. Q. Mao, R. Huang, C. Duan, Y. Xi, K. Yang and R. P. Huang: Protein expression profiling by antibody array analysis with use of dried blood spot samples on filter paper. J Immunol Methods, 403(1-2), 79-86 (2014)
[49]R. Wellhausen and H. Seitz: Facing current quantification challenges in protein microarrays. J Biomed Biotechnol, 2012, 831347 (2012)
[50]H. C. Toh, W. W. Wang, W. K. Chia, P. Kvistborg, L. Sun, K. Teo, Y. P. Phoon, Y. Soe, S. H. Tan, S. W. Hee, K. F. Foo, S. Ong, W. H. Koo, M. B. Zocca and M. H. Claesson: Clinical Benefit of Allogeneic Melanoma Cell Lysate-Pulsed Autologous Dendritic Cell Vaccine in MAGE-Positive Colorectal Cancer Patients. Clin Cancer Res, 15(24), 7726-7736 (2009)
[51]Z. Hou, L. Sun, L. Gao, L. Liao, Y. Mao and J. Liu: Cytokine array analysis of peritoneal fluid between women with endometriosis of different stages and those without endometriosis. Biomarkers, 14(8), 604-18 (2009)
[52]N. L. Pochet and J. A. Suykens: Support vector machines versus logistic regression: improving prospective performance in clinical decision-making. Ultrasound Obstet Gynecol, 27(6), 607-8 (2006)
[53]D. Timmerman, A. C. Testa, T. Bourne, E. Ferrazzi, L. Ameye, M. L. Konstantinovic, B. Van Calster, W. P. Collins, I. Vergote, S. Van Huffel, L. Valentin and G. International Ovarian Tumor Analysis: Logistic regression model to distinguish between the benign and malignant adnexal mass before surgery: a multicenter study by the International Ovarian Tumor Analysis Group. J Clin Oncol, 23(34), 8794-801 (2005)
[54]F. De Smet, J. De Brabanter, T. Van den Bosch, N. Pochet, F. Amant, C. Van Holsbeke, P. Moerman, B. De Moor, I. Vergote and D. Timmerman: New models to predict depth of infiltration in endometrial carcinoma based on transvaginal sonography. Ultrasound Obstet Gynecol, 27(6), 664-71 (2006)
[55]A. Agresti: Categorical Data Analysis. In: Categorical Data Analysis. Wiley-Interscience, (2002)
[56]R. A. Johnson and D. W. Wichern: Applied multivariate statistical analysis. Prentice-Hall, Inc., (1988)
[57]T. G. Nick and K. M. Campbell: Logistic regression. Methods Mol Biol, 404, 273-301 (2007)
[58]M. A. Babyak: What you see may not be what you get: a brief, nontechnical introduction to overfitting in regression-type models. Psychosom Med, 66(3), 411-21 (2004)
[59]M. Claesen, J. Simm, D. Popovic, Y. Moreau and B. De Moor: Easy Hyperparameter Search Using Optunity. arXiv preprint arXiv:1412. 1114 (2014)
[60]M. Hall: Correlation-based Feature Selection for Machine Learning. In: Department of Computer Science. University of Waikato, Hamilton, New Zealand (1999)
[61]D. François, F. Rossi, V. Wertz and M. Verleysen: Resampling methods for parameter-free and robust feature selection with mutual information. Neurocomputing, 70(7), 1276-1288 (2007)
[62]B. Seeber, M. D. Sammel, X. Fan, G. L. Gerton, A. Shaunik, J. Chittams and K. T. Barnhart: Proteomic analysis of serum yields six candidate proteins that are differentially regulated in a subset of women with endometriosis. Fertil Steril, 93(7), 2137-44 (2010)
[63]P. J. Lisboa: A review of evidence of health benefit from artificial neural networks in medical intervention. Neural Netw, 15(1), 11-39 (2002)
[64]P. J. Lisboa and A. F. Taktak: The use of artificial neural networks in decision support in cancer: a systematic review. Neural Netw, 19(4), 408-15 (2006)
[65]L. Wang, W. Zheng, L. Mu and S. Z. Zhang: Identifying biomarkers of endometriosis using serum protein fingerprinting and artificial neural networks. Int J Gynaecol Obstet, 101(3), 253-8 (2008)
[66]E. Kalu, N. Sumar, T. Giannopoulos, P. Patel, C. Croucher, E. Sherriff and A. Bansal: Cytokine profiles in serum and peritoneal fluid from infertile women with and without endometriosis. J Obstet Gynaecol Res 33, 490-5 (2007)
[67]X. Zhou, M. S. Fragala, J. E. McElhaney and G. A. Kuchel: Conceptual and methodological issues relevant to cytokine and inflammatory marker measurements in clinical research. Curr Opin Clin Nutr Metab Care 13, 541-7 (2010)
[68]G. M. Borrelli, M. S. Abrao and S. Mechsner: Can chemokines be used as biomarkers for endometriosis? A systematic review. Hum Reprod 29, 253-66 (2014)
[69]E. C. Breen, S. M. Reynolds, C. Cox, L. P. Jacobson, L. Magpantay, C. B. Mulder, O. Dibben, J. B. Margolick, J. H. Bream, E. Sambrano, O. Martinez-Maza, E. Sinclair, P. Borrow, A. L. Landay, C. R. Rinaldo and P. J. Norris: Multisite comparison of high-sensitivity multiplex cytokine assays. Clin Vaccine Immunol 18, 1229-42 (2011)
[70]Y. C. Cheong, S. M. Laird, T. C. Li, J. B. Shelton, W. L. Ledger and I. D. Cooke: Peritoneal healing and adhesion formation/reformation. Hum Reprod Update 7, 556-66 (2001)
[71]M. D. Moody, S. W. Van Arsdell, K. P. Murphy, S. F. Orencole and C. Burns: Array-based ELISAs for high-throughput analysis of human cytokines. Biotechniques, 31(1), 186-90, 192-4 (2001)
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Frontiers in Bioscience-Landmark (FBL) is published by IMR Press from Volume 26 Issue 5 (2021). Previous articles were published by another publisher on a subscription basis, and they are hosted by IMR Press on imrpress.com as a courtesy and upon agreement with Frontiers in Bioscience.
Multiplex immunoassays in endometriosis: An array of possibilities
1 KU Leuven, Department of Development and Regeneration, Organ Systems, Leuven, Belgium
2 Department of Obstetrics and Gynaecology, Leuven University Fertility Centre, University Hospital Leuven, Leuven, Belgium
3 Department of Electrical Engineering (ESAT), STADIUS Center for Dynamical Systems, Signal Processing, and Data Analytics, KU Leuven, Kasteelpark Arenberg 10, Box 2446, 3001 Leuven, Belgium
4 iMinds Medical IT, Kasteelpark Arenberg 10, Box 2446, 3001 Leuven, Belgium
5 KU Leuven, Department of Cellular and Molecular Medicine, Campus Gasthuisberg, Leuven, Belgium
6 SyBioMa, Interfaculty Centre for Systems Biology Based Mass Spectrometry, Campus Gasthuisberg, Leuven, Belgium
7 Division of Reproductive Biology, Institute of Primate Research, Karen, Nairobi, Kenya
Abstract
Multiplex immunoassays range from small-scaled multiplex sandwich ELISAs in a planar or bead-based format to the more expanded antibody arrays employing direct sample labeling. The plethora of data generated from these arrays could be of great interest to understand a complex disorder such as endometriosis. Multiplex immunoassay analysis may provide information on disease pathology and may lead to improved, timely diagnosis. Until now, the use of multiplex immunoassays has been limited in endometriosis. With the constant development of multiplex technologies, future studies should focus on implementing these techniques, and combining them with multivariate statistical analysis. In this review, we provide an overview of multiplex immunoassay methods used in endometriosis studies and the data sets acquired by these methodologies. These data and future studies might provide novel insights for biomarker discovery and investigation of the pathogenesis in endometriosis.
Keywords
- Endometriosis
- Multiplex Immunoassay
- Planar Analytical Sandwich ELISA
- Bead-based Immunoassay
- Label-based Antibody Array
- Biomarker
- Multivariate Statistics
- Review
References
- [1] L. C. Giudice and L. C. Kao: Endometriosis. Lancet, 364(9447), 1789-99 (2004)
- [2] J. A. Sampson: Peritoneal endometriosis due to the menstrual dissemination of endometrial tissue into the peritoneal cavity. Am. J. Obstet. Gynecol., 14, 422-469 (1927)
- [3] R. O. Burney and L. C. Giudice: Pathogenesis and pathophysiology of endometriosis. Fertil Steril, 98(3), 511-9 (2012)
- [4] S. Kennedy, A. Bergqvist, C. Chapron, T. D’Hooghe, G. Dunselman, R. Greb, L. Hummelshoj, A. Prentice, E. Saridogan, E. S. I. G. f. Endometriosis and G. Endometrium Guideline Development: ESHRE guideline for the diagnosis and treatment of endometriosis. Hum Reprod, 20(10), 2698-704(2005)
- [5] A. Fassbender, A. Vodolazkaia, P. Saunders, D. Lebovic, E. Waelkens, B. De Moor and T. D’Hooghe: Biomarkers of endometriosis. Fertil Steril, 99(4), 1135-45 (2013)
- [6] K. E. May, S. A. Conduit-Hulbert, J. Villar, S. Kirtley, S. H. Kennedy and C. M. Becker: Peripheral biomarkers of endometriosis: a systematic review. Hum Reprod Update, 16(6), 651-74 (2010)
- [7] A. Fassbender, R. O. Burney, D. F. O, T. D’Hooghe and L. Giudice: Update on Biomarkers for the Detection of Endometriosis. Biomed Res Int, 2015, 130854 (2015)
- [8] X. Robin, N. Turck, A. Hainard, F. Lisacek, J. C. Sanchez and M. Muller: Bioinformatics for protein biomarker panel classification: what is needed to bring biomarker panels into in vitro diagnostics? Expert Rev Proteomics, 6(6), 675-89 (2009)
- [9] B. B. Haab: Methods and applications of antibody microarrays in cancer research. Proteomics, 3(11), 2116-22 (2003)
- [10] B. Seeber, M. D. Sammel, X. Fan, G. L. Gerton, A. Shaunik, J. Chittams and K. T. Barnhart: Panel of markers can accurately predict endometriosis in a subset of patients. Fertil Steril, 89(5), 1073-81 (2008)
- [11] A. Vodolazkaia, Y. El-Aalamat, D. Popovic, A. Mihalyi, X. Bossuyt, C. M. Kyama, A. Fassbender, A. Bokor, D. Schols, D. Huskens, C. Meuleman, K. Peeraer, C. Tomassetti, O. Gevaert, E. Waelkens, A. Kasran, B. De Moor and T. M. D’Hooghe: Evaluation of a panel of 28 biomarkers for the non-invasive diagnosis of endometriosis. Hum Reprod, 27(9), 2698-711 (2012)
- [12] T. L. Rizner: Noninvasive biomarkers of endometriosis: myth or reality? Expert Rev Mol Diagn, 14(3), 365-85 (2014)
- [13] K. E. May, J. Villar, S. Kirtley, S. H. Kennedy and C. M. Becker: Endometrial alterations in endometriosis: a systematic review of putative biomarkers. Hum Reprod Update, 17(5), 637-53 (2011)
- [14] C. Mohan and S. Assassi: Biomarkers in rheumatic diseases: how can they facilitate diagnosis and assessment of disease activity? BMJ, 351, h5079 (2015)
- [15] J. R. Curtis, A. H. van der Helm-van Mil, R. Knevel, T. W. Huizinga, D. J. Haney, Y. Shen, S. Ramanujan, G. Cavet, M. Centola, L. K. Hesterberg, D. Chernoff, K. Ford, N. A. Shadick, M. Hamburger, R. Fleischmann, E. Keystone and M. E. Weinblatt: Validation of a novel multibiomarker test to assess rheumatoid arthritis disease activity. Arthritis Care Res (Hoboken), 64(12), 1794-803 (2012)
- [16] M. F. Templin, D. Stoll, J. M. Schwenk, O. Potz, S. Kramer and T. O. Joos: Protein microarrays: promising tools for proteomic research. Proteomics, 3(11), 2155-66 (2003)
- [17] S. X. Leng, J. E. McElhaney, J. D. Walston, D. Xie, N. S. Fedarko and G. A. Kuchel: ELISA and multiplex technologies for cytokine measurement in inflammation and aging research. J Gerontol A Biol Sci Med Sci, 63(8), 879-84 (2008)
- [18] R. P. Huang, B. Burkholder, V. S. Jones, W. D. Jiang, Y. Q. Mao, Q. L. Chen and Z. Shi: Cytokine Antibody Arrays in Biomarker Discovery and Validation. Current Proteomics, 9(1), 55-70 (2012)
- [19] S. F. Kingsmore: Multiplexed protein measurement: technologies and applications of protein and antibody arrays. Nat Rev Drug Discov, 5(4), 310-20 (2006)
- [20] R. N. Fichorova, N. Richardson-Harman, M. Alfano, L. Belec, C. Carbonneil, S. Chen, L. Cosentino, K. Curtis, C. S. Dezzutti, B. Donoval, G. F. Doncel, M. Donaghay, J. C. Grivel, E. Guzman, M. Hayes, B. Herold, S. Hillier, C. Lackman-Smith, A. Landay, L. Margolis, K. H. Mayer, J. M. Pasicznyk, M. Pallansch-Cokonis, G. Poli, P. Reichelderfer, P. Roberts, I. Rodriguez, H. Saidi, R. R. Sassi, R. Shattock and J. E. Cummins, Jr.: Biological and technical variables affecting immunoassay recovery of cytokines from human serum and simulated vaginal fluid: a multicenter study. Anal Chem, 80(12), 4741-51(2008)
- [21] K. Kohler and H. Seitz: Validation processes of protein biomarkers in serum--a cross platform comparison. Sensors (Basel), 12(9), 12710-28 (2012)
- [22] M. F. Elshal and J. P. McCoy: Multiplex bead array assays: performance evaluation and comparison of sensitivity to ELISA. Methods, 38(4), 317-23 (2006)
- [23] R. Huang, W. Jiang, J. Yang, Y. Q. Mao, Y. Zhang, W. Yang, D. Yang, B. Burkholder, R. F. Huang and R. P. Huang: A biotin label-based antibody array for high-content profiling of protein expression. Cancer Genomics Proteomics, 7(3), 129-41 (2010)
- [24] M. E. Arellano-Garcia, S. Hu, J. Wang, B. Henson, H. Zhou, D. Chia and D. T. Wong: Multiplexed immunobead-based assay for detection of oral cancer protein biomarkers in saliva. Oral Dis, 14(8), 705-12 (2008)
- [25] T. Knickerbocker, J. R. Chen, R. Thadhani and G. MacBeath: An integrated approach to prognosis using protein microarrays and nonparametric methods. Mol Syst Biol, 3, 123 (2007)
- [26] P. J. Tighe, R. R. Ryder, I. Todd and L. C. Fairclough: ELISA in the multiplex era: potentials and pitfalls. Proteomics Clin Appl, 9(3-4), 406-22 (2015)
- [27] P. Laudanski, J. Szamatowicz and M. Oniszczuk: Profiling of peritoneal fluid of women with endometriosis by chemokine protein array. Adv Med Sci 51, 148-52 (2006)
- [28] T. Yiğitbaşı: Multiplex Immunoassay and Bead Based Multiplex. In: Trends in Immunolabelled and Related Techniques. Ed E. Abuelzein. (2012)
- [29] L. de Koning, C. Liptak, A. Shkreta, G. Bradwin, F. B. Hu, A. D. Pradhan, N. Rifai and M. D. Kellogg: A multiplex immunoassay gives different results than singleplex immunoassays which may bias epidemiologic associations. Clin Biochem, 45(10-11), 848-51 (2012)
- [30] M. Liew, M. C. Groll, J. E. Thompson, S. L. Call, J. E. Moser, J. D. Hoopes, K. Voelkerding, C. Wittwer and R. S. Spendlove: Validating a custom multiplex ELISA against individual commercial immunoassays using clinical samples. Biotechniques, 42(3), 327-8, 330-3 (2007)
- [31] Q. Fu, J. Zhu and J. E. Van Eyk: Comparison of multiplex immunoassay platforms. Clin Chem, 56(2), 314-8 (2010)
- [32] P. Díez, N. Dasilva, M. González-González, S. Matarraz, J. Casado-Vela, A. Orfao and M. Fuentes: Data analysis strategies for protein microarrays. Microarrays, 1(2), 64-83 (2012)
- [33] H. D. Soares, Y. Chen, M. Sabbagh, A. Roher, E. Schrijvers and M. Breteler: Identifying early markers of Alzheimer’s disease using quantitative multiplex proteomic immunoassay panels. Ann N Y Acad Sci, 1180, 56-67(2009)
- [34] A. Tarnok, J. Hambsch, R. Chen and R. Varro: Cytometric bead array to measure six cytokines in twenty-five microliters of serum. Clin Chem, 49(6 Pt 1), 1000-2 (2003)
- [35] Y. W. Kim, S. M. Bae, I. W. Kim, H. B. Liu, H. J. Bang, P. K. Chaturvedi, G. Battogtokh, H. Lim and W. S. Ahn: Multiplexed bead-based immunoassay of four serum biomarkers for diagnosis of ovarian cancer. Oncol Rep, 28(2), 585-91 (2012)
- [36] N. A. Bersinger, H. Dechaud, B. McKinnon and M. D. Mueller: Analysis of cytokines in the peritoneal fluid of endometriosis patients as a function of the menstrual cycle stage using the Bio-Plex(R) platform. Arch Physiol Biochem, 118(4), 210-8 (2012)
- [37] J. Mier-Cabrera, L. Jimenez-Zamudio, E. Garcia-Latorre, O. Cruz-Orozco and C. Hernandez-Guerrero: Quantitative and qualitative peritoneal immune profiles, T-cell apoptosis and oxidative stress-associated characteristics in women with minimal and mild endometriosis. BJOG, 118(1), 6-16 (2011)
- [38] M. T. Beste, N. Pfaffle-Doyle, E. A. Prentice, S. N. Morris, D. A. Lauffenburger, K. B. Isaacson and L. G. Griffith: Molecular network analysis of endometriosis reveals a role for c-Jun-regulated macrophage activation. Sci Transl Med, 6(222), 222ra16 (2014)
- [39] S. Podgaec, M. S. Abrao, J. A. Dias, Jr., L. V. Rizzo, R. M. de Oliveira and E. C. Baracat: Endometriosis: an inflammatory disease with a Th2 immune response component. Hum Reprod, 22(5), 1373-9 (2007)
- [40] D. Wickiewicz, A. Chrobak, G. B. Gmyrek, A. Halbersztadt, M. S. Gabrys, M. Goluda and A. Chelmonska-Soyta: Diagnostic accuracy of interleukin-6 levels in peritoneal fluid for detection of endometriosis. Arch Gynecol Obstet, 288(4), 805-14 (2013)
- [41] D. Othman Eel, D. Hornung, H. T. Salem, E. A. Khalifa, T. H. El-Metwally and A. Al-Hendy: Serum cytokines as biomarkers for nonsurgical prediction of endometriosis. Eur J Obstet Gynecol Reprod Biol, 137(2), 240-6 (2008)
- [42] G. M. Borrelli, A. M. Kaufmann, M. S. Abrao and S. Mechsner: Addition of MCP-1 and MIP-3beta to the IL-8 appraisal in peritoneal fluid enhances the probability of identifying women with endometriosis. J Reprod Immunol, 109, 66-73 (2015)
- [43] V. Kocbek, K. Vouk, N. A. Bersinger, M. D. Mueller and T. Lanisnik Rizner: Panels of cytokines and other secretory proteins as potential biomarkers of ovarian endometriosis. J Mol Diagn, 17(3), 325-34 (2015)
- [44] A. M. Malutan, T. Drugan, N. Costin, R. Ciortea, C. Bucuri, M. P. Rada and D. Mihu: Pro-inflammatory cytokines for evaluation of inflammatory status in endometriosis. Cent Eur J Immunol, 40(1), 96-102 (2015)
- [45] I. H. Khan, V. V. Krishnan, M. Ziman, K. Janatpour, T. Wun, P. A. Luciw and J. Tuscano: A comparison of multiplex suspension array large-panel kits for profiling cytokines and chemokines in rheumatoid arthritis patients. Cytometry B Clin Cytom, 76(3), 159-68 (2009)
- [46] S. P. Gygi and R. Aebersold: Mass spectrometry and proteomics. Curr Opin Chem Biol, 4(5), 489-94 (2000)
- [47] T. Liu, R. Xue, L. Dong, H. Wu, D. Zhang and X. Shen: Rapid determination of serological cytokine biomarkers for hepatitis B virus-related hepatocellular carcinoma using antibody microarrays. Acta Biochim Biophys Sin (Shanghai), 43(1), 45-51 (2011)
- [48] W. Jiang, Y. Q. Mao, R. Huang, C. Duan, Y. Xi, K. Yang and R. P. Huang: Protein expression profiling by antibody array analysis with use of dried blood spot samples on filter paper. J Immunol Methods, 403(1-2), 79-86 (2014)
- [49] R. Wellhausen and H. Seitz: Facing current quantification challenges in protein microarrays. J Biomed Biotechnol, 2012, 831347 (2012)
- [50] H. C. Toh, W. W. Wang, W. K. Chia, P. Kvistborg, L. Sun, K. Teo, Y. P. Phoon, Y. Soe, S. H. Tan, S. W. Hee, K. F. Foo, S. Ong, W. H. Koo, M. B. Zocca and M. H. Claesson: Clinical Benefit of Allogeneic Melanoma Cell Lysate-Pulsed Autologous Dendritic Cell Vaccine in MAGE-Positive Colorectal Cancer Patients. Clin Cancer Res, 15(24), 7726-7736 (2009)
- [51] Z. Hou, L. Sun, L. Gao, L. Liao, Y. Mao and J. Liu: Cytokine array analysis of peritoneal fluid between women with endometriosis of different stages and those without endometriosis. Biomarkers, 14(8), 604-18 (2009)
- [52] N. L. Pochet and J. A. Suykens: Support vector machines versus logistic regression: improving prospective performance in clinical decision-making. Ultrasound Obstet Gynecol, 27(6), 607-8 (2006)
- [53] D. Timmerman, A. C. Testa, T. Bourne, E. Ferrazzi, L. Ameye, M. L. Konstantinovic, B. Van Calster, W. P. Collins, I. Vergote, S. Van Huffel, L. Valentin and G. International Ovarian Tumor Analysis: Logistic regression model to distinguish between the benign and malignant adnexal mass before surgery: a multicenter study by the International Ovarian Tumor Analysis Group. J Clin Oncol, 23(34), 8794-801 (2005)
- [54] F. De Smet, J. De Brabanter, T. Van den Bosch, N. Pochet, F. Amant, C. Van Holsbeke, P. Moerman, B. De Moor, I. Vergote and D. Timmerman: New models to predict depth of infiltration in endometrial carcinoma based on transvaginal sonography. Ultrasound Obstet Gynecol, 27(6), 664-71 (2006)
- [55] A. Agresti: Categorical Data Analysis. In: Categorical Data Analysis. Wiley-Interscience, (2002)
- [56] R. A. Johnson and D. W. Wichern: Applied multivariate statistical analysis. Prentice-Hall, Inc., (1988)
- [57] T. G. Nick and K. M. Campbell: Logistic regression. Methods Mol Biol, 404, 273-301 (2007)
- [58] M. A. Babyak: What you see may not be what you get: a brief, nontechnical introduction to overfitting in regression-type models. Psychosom Med, 66(3), 411-21 (2004)
- [59] M. Claesen, J. Simm, D. Popovic, Y. Moreau and B. De Moor: Easy Hyperparameter Search Using Optunity. arXiv preprint arXiv:1412. 1114 (2014)
- [60] M. Hall: Correlation-based Feature Selection for Machine Learning. In: Department of Computer Science. University of Waikato, Hamilton, New Zealand (1999)
- [61] D. François, F. Rossi, V. Wertz and M. Verleysen: Resampling methods for parameter-free and robust feature selection with mutual information. Neurocomputing, 70(7), 1276-1288 (2007)
- [62] B. Seeber, M. D. Sammel, X. Fan, G. L. Gerton, A. Shaunik, J. Chittams and K. T. Barnhart: Proteomic analysis of serum yields six candidate proteins that are differentially regulated in a subset of women with endometriosis. Fertil Steril, 93(7), 2137-44 (2010)
- [63] P. J. Lisboa: A review of evidence of health benefit from artificial neural networks in medical intervention. Neural Netw, 15(1), 11-39 (2002)
- [64] P. J. Lisboa and A. F. Taktak: The use of artificial neural networks in decision support in cancer: a systematic review. Neural Netw, 19(4), 408-15 (2006)
- [65] L. Wang, W. Zheng, L. Mu and S. Z. Zhang: Identifying biomarkers of endometriosis using serum protein fingerprinting and artificial neural networks. Int J Gynaecol Obstet, 101(3), 253-8 (2008)
- [66] E. Kalu, N. Sumar, T. Giannopoulos, P. Patel, C. Croucher, E. Sherriff and A. Bansal: Cytokine profiles in serum and peritoneal fluid from infertile women with and without endometriosis. J Obstet Gynaecol Res 33, 490-5 (2007)
- [67] X. Zhou, M. S. Fragala, J. E. McElhaney and G. A. Kuchel: Conceptual and methodological issues relevant to cytokine and inflammatory marker measurements in clinical research. Curr Opin Clin Nutr Metab Care 13, 541-7 (2010)
- [68] G. M. Borrelli, M. S. Abrao and S. Mechsner: Can chemokines be used as biomarkers for endometriosis? A systematic review. Hum Reprod 29, 253-66 (2014)
- [69] E. C. Breen, S. M. Reynolds, C. Cox, L. P. Jacobson, L. Magpantay, C. B. Mulder, O. Dibben, J. B. Margolick, J. H. Bream, E. Sambrano, O. Martinez-Maza, E. Sinclair, P. Borrow, A. L. Landay, C. R. Rinaldo and P. J. Norris: Multisite comparison of high-sensitivity multiplex cytokine assays. Clin Vaccine Immunol 18, 1229-42 (2011)
- [70] Y. C. Cheong, S. M. Laird, T. C. Li, J. B. Shelton, W. L. Ledger and I. D. Cooke: Peritoneal healing and adhesion formation/reformation. Hum Reprod Update 7, 556-66 (2001)
- [71] M. D. Moody, S. W. Van Arsdell, K. P. Murphy, S. F. Orencole and C. Burns: Array-based ELISAs for high-throughput analysis of human cytokines. Biotechniques, 31(1), 186-90, 192-4 (2001)
