IMR Press / FBL / Volume 17 / Issue 2 / DOI: 10.2741/3941

Frontiers in Bioscience-Landmark (FBL) is published by IMR Press from Volume 26 Issue 5 (2021). Previous articles were published by another publisher on a subscription basis, and they are hosted by IMR Press on imrpress.com as a courtesy and upon agreement with Frontiers in Bioscience.

Review
DNA polymerases: mechanistic insight from biochemical and biophysical studies
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1 Institut Jacques Monod, Pathologies of DNA replication, CNRS UMR7592 - Universite Paris Diderot, 15 rue Helene Brion, 75205 Paris Cedex 13, France Museum National d’Histoire Naturelle, Departement “Regulations, Developpement et Diversite Moleculaire”, USM 0503 - Inserm U565 - CNRS UMR7196, Case Postale n°26, 57 rue Cuvier, 75231 Paris Cedex 05, France
Front. Biosci. (Landmark Ed) 2012, 17(2), 509–544; https://doi.org/10.2741/3941
Published: 1 January 2012
Abstract

In vivo the DNA polymerases are responsible for replicative and repair DNA synthesis. These enzymes use the pre-existing 3'-OH group of a primer annealed to a single-stranded DNA template to incorporate monophosphate deoxynucleosides (dNMPs) in a sequential and directional manner. Although all DNA polymerases share a similar catalytic core constituted by a palm, a thumb and a fingers domain and a similar chemical mechanism of dNMP incorporation that requires two metal cations, they intrinsically differ by the nature of the step that controls the incorporation of dNMP and by their capacity to cope with lesions. Several factors, such as the size of the active site, the flexibility of the DNA in the active site or the presence of protein subdomains devoid of known catalytic activity but able to accommodate small DNA loops, control the fidelity of DNA polymerases. Auxiliary replication factors, such as the processivity factor or the single-stranded DNA binding protein, can also modulate the intrinsic properties of DNA polymerases and therefore fine-tune the cellular function of DNA polymerases.

Keywords
DNA synthesis
DNA replication
DNA repair
DNA polymerases
high-fidelity
TLS
processivity factor
SSB
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