IMR Press / FBL / Volume 26 / Issue 3 / DOI: 10.2741/4903

Frontiers in Bioscience-Landmark (FBL) is published by IMR Press from Volume 26 Issue 5 (2021). Previous articles were published by another publisher on a subscription basis, and they are hosted by IMR Press on imrpress.com as a courtesy and upon agreement with Frontiers in Bioscience.

Open Access Review
Microbiomics and cloud-based analytics advance sustainable soil management
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1 Department of Biotechnology, School of Applied Sciences, REVA University, Rukmini Knowledge Park, Bangalore-560064, Karnataka, India
2 Molsys Scientific (Molsys Pvt. Ltd) Yelahanka, Bangalore, Karnataka, India
3 Department of Biotechnology, Bodoland University, Kokrajhar- 783370, Assam, India
4 Department of Plant Pathology, University of Agricultural Sciences, Bengaluru- 560065, India
5 Department of Biochemistry, Maharani Lakshmi Ammani College for Women, Bengaluru-560012, Karnataka, India
6 Department of Biotechnology, Maharani Lakshmi Ammani College for Women, Bengaluru-560012, Karnataka, India
Send correspondence to: Dr. Sushil Kumar Middha, Department of Biotechnology, Maharani Lakshmi Ammanni College for Women, Bangalore-560012, Karnataka, India, Tel: 91-9886098267, Fax: 0802334 9311, E-mail: drsushilmiddha@gmail.com
Front. Biosci. (Landmark Ed) 2021, 26(3), 478–495; https://doi.org/10.2741/4903
Published: 1 October 2020
(This article belongs to the Special Issue Aging in animals)
Abstract

Soil constitutes a major component of the agro-ecosystem. Unrestrained uses of chemical pesticides and increased human activities have contributed to unprecedented changes in soil microflora affecting productivity. Modern microbiomics has proven to be an indispensable tool to understand the adaptations underlying complex soil microbial communities and their beneficial applications. In this review, we seek to emphasize the scope of microbiomics in enhancing soil productivity by providing an overview of the various sequencing platforms considering key parameters such as the accuracy, read lengths, reads per run, time involved and weighing out their pros and cons. The advances in modern ultra-high-throughput microbiomics platforms in combination with cloud-based analytics for in-depth exploration of soil-microbe associations can help achieve sustainable soil management contributing to better plant yield and productivity.

Keywords
Microbiomics
Soil
Metagenomics
DNA
Sequencing
Review
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