IMR Press / FBE / Volume 7 / Issue 1 / DOI: 10.2741/715

Frontiers in Bioscience-Elite (FBE) is published by IMR Press from Volume 13 Issue 2 (2021). Previous articles were published by another publisher on a subscription basis, and they are hosted by IMR Press on imrpress.com as a courtesy and upon agreement with Frontiers in Bioscience.

Open Access Review
The building process of the functional paraspeckle with long non-coding RNAs
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1 Institute for Genetic Medicine, Hokkaido University, Sapporo 060-0815, Japan

*Author to whom correspondence should be addressed.

Academic Editor: Tominori Kimura

Front. Biosci. (Elite Ed) 2015, 7(1), 1–47; https://doi.org/10.2741/715
Published: 1 January 2015
(This article belongs to the Special Issue Regulatory long non-coding RNA)
Abstract

Nuclei of mammalian cells are highly organized and composed of distinct subnuclear structures termed nuclear bodies. Paraspeckles are subnuclear structures that form around the long non-coding RNA (lncRNA) nuclear paraspeckle assembly transcript 1 (NEAT1) together with numerous RNA-binding proteins, many of which contain an RNA-binding domain and a prion-like domain and are related to specific neurodegenerative diseases. Paraspeckle formation proceeds in conjunction with NEAT1 lncRNA biogenesis and involves the cooperation of multiple paraspeckle-localized RNA-binding proteins. NEAT1 lncRNA likely sequesters these RNA-binding proteins in paraspeckle structures, which act as molecular sponges at which the nucleoplasmic activities of the sequestered proteins are modulated. This review presents, firstly, current knowledge regarding factors involved in the formation and function of paraspeckles. Secondly, the intracellular functions of all identified paraspeckle proteins, which are potentially controlled through their sequestration in paraspeckles, are categorized. Thirdly, recently identified nuclear bodies containing putative architectural lncRNAs are described and similarities among the architectures of lncRNA-dependent nuclear bodies are discussed.

Keywords
Long noncoding RNA
Paraspeckle
NEAT1 lncRNA
Nuclear body
Prion-like domain
Neurodegenerative diseases
Review
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